ChromosomeT_base< T > Class Template Reference

base class for chromosomes that are of the template type std::vector More...

#include <ChromosomeT.h>

Inheritance diagram for ChromosomeT_base< T >:
Chromosome ChromosomeT< T > ChromosomeT_num< T >

List of all members.

Public Member Functions

 ChromosomeT_base ()
 ChromosomeT_base (unsigned l)
 ChromosomeT_base (unsigned l, const T &v)
 ChromosomeT_base (const std::vector< T > &v)
const char * typeOfAlleles () const
unsigned sizeOfAlleles () const
unsigned size () const
Chromosome & operator= (const Chromosome &c)
Chromosome & operator= (const std::vector< T > &c)
Chromosome & operator= (const ChromosomeT_base< T > &c)
Chromosome & operator= (const T &c)
void resize (unsigned n)
void duplicate (unsigned start, unsigned stop, unsigned dest)
void invert (unsigned start, unsigned stop, unsigned granularity=1)
void invert (unsigned granularity=1)
void transcribe (unsigned start, unsigned stop, const Chromosome &chrom)
void swap (unsigned i, unsigned j)
void shuffle ()
void replace (unsigned i, const T &v)
void replace (unsigned i, const Chromosome &chrom)
void insert (unsigned i, const T &allele)
void insert (unsigned i, const Chromosome &chrom)
void append (const T &allele)
void append (const Chromosome &chrom)
void remove (unsigned i)
void remove (unsigned i, unsigned k)
void rotateRight (unsigned n=1)
void rotateLeft (unsigned n=1)
void crossover (const Chromosome &dadChrom, const Chromosome &momChrom, const std::vector< unsigned > &points)
void crossover (Chromosome &mate, const std::vector< unsigned > &points)
void crossover (const Chromosome &dadChrom, const Chromosome &momChrom, const std::vector< bool > &pos)
void crossover (Chromosome &mate, const std::vector< bool > &pos)
void crossover (const Chromosome &dadChrom, const Chromosome &momChrom, unsigned npoints, unsigned align=1, bool chromswap=0)
void crossover (Chromosome &mate, unsigned npoints, unsigned align=1, bool chromswap=0)
void crossover (const Chromosome &dadChrom, const Chromosome &momChrom, const Chromosome &posChrom)
void crossover (Chromosome &mate, const Chromosome &posChrom)
void crossoverUniform (const Chromosome &dadChrom, const Chromosome &momChrom, const std::vector< bool > &pos)
void crossoverUniform (Chromosome &mateChrom, const std::vector< bool > &pos)
void crossoverUniform (const Chromosome &dadChrom, const Chromosome &momChrom)
void crossoverUniform (Chromosome &mateChrom)
void crossoverUniform (const Chromosome &dadChrom, const Chromosome &momChrom, const Chromosome &posChrom)
void crossoverUniform (Chromosome &mateChrom, const Chromosome &posChrom)
void recombineDiscrete (const Chromosome &dad, const Chromosome &mom)
void recombineDiscrete (Chromosome &mate)
void writeTo (std::ostream &os) const
void readFrom (std::istream &is)

Protected Member Functions

Chromosome * clone () const
Chromosome * empty () const

Detailed Description

template<class T>
class ChromosomeT_base< T >

base class for chromosomes that are of the template type std::vector

Definition at line 68 of file ChromosomeT.h.

Constructor & Destructor Documentation

template<class T>
ChromosomeT_base< T >::ChromosomeT_base (  )  [inline]

Definition at line 71 of file ChromosomeT.h.

template<class T>
ChromosomeT_base< T >::ChromosomeT_base ( unsigned  l  )  [inline, explicit]

Definition at line 73 of file ChromosomeT.h.

template<class T>
ChromosomeT_base< T >::ChromosomeT_base ( unsigned  l,
const T &  v 
) [inline]

Definition at line 75 of file ChromosomeT.h.

template<class T>
ChromosomeT_base< T >::ChromosomeT_base ( const std::vector< T > &  v  )  [inline]

Definition at line 77 of file ChromosomeT.h.

Member Function Documentation

template<class T>
void ChromosomeT_base< T >::append ( const Chromosome &  chrom  )  [inline]

Definition at line 310 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::append ( const T &  allele  )  [inline]

Definition at line 300 of file ChromosomeT.h.

template<class T>
Chromosome* ChromosomeT_base< T >::clone (  )  const [inline, protected, virtual]

Implements Chromosome.

Reimplemented in ChromosomeCMA, ChromosomeCMACholesky, ChromosomeT< T >, ChromosomeT< double >, ChromosomeT< char >, ChromosomeT< int >, and ChromosomeT< bool >.

Definition at line 855 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( Chromosome &  mate,
const Chromosome &  posChrom 
) [inline]

Definition at line 636 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
const Chromosome &  posChrom 
) [inline]

Definition at line 623 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( Chromosome &  mate,
unsigned  npoints,
unsigned  align = 1,
bool  chromswap = 0 
) [inline]

Definition at line 593 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
unsigned  npoints,
unsigned  align = 1,
bool  chromswap = 0 
) [inline]

Definition at line 562 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( Chromosome &  mate,
const std::vector< bool > &  pos 
) [inline]

Definition at line 527 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
const std::vector< bool > &  pos 
) [inline]

Definition at line 495 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( Chromosome &  mate,
const std::vector< unsigned > &  points 
) [inline]

Definition at line 444 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossover ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
const std::vector< unsigned > &  points 
) [inline]

Definition at line 394 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::crossover().

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( Chromosome &  mateChrom,
const Chromosome &  posChrom 
) [inline]

Definition at line 768 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
const Chromosome &  posChrom 
) [inline]

Definition at line 755 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( Chromosome &  mateChrom  )  [inline]

Definition at line 724 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( const Chromosome &  dadChrom,
const Chromosome &  momChrom 
) [inline]

Definition at line 702 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( Chromosome &  mateChrom,
const std::vector< bool > &  pos 
) [inline]

Definition at line 670 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::crossoverUniform ( const Chromosome &  dadChrom,
const Chromosome &  momChrom,
const std::vector< bool > &  pos 
) [inline]

Definition at line 647 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::crossoverUniform(), and ChromosomeT_base< bool >::recombineDiscrete().

template<class T>
void ChromosomeT_base< T >::duplicate ( unsigned  start,
unsigned  stop,
unsigned  dest 
) [inline, virtual]

Implements Chromosome.

Definition at line 142 of file ChromosomeT.h.

template<class T>
Chromosome* ChromosomeT_base< T >::empty (  )  const [inline, protected, virtual]

Implements Chromosome.

Reimplemented in ChromosomeCMA, ChromosomeCMACholesky, ChromosomeT< T >, ChromosomeT< double >, ChromosomeT< char >, ChromosomeT< int >, and ChromosomeT< bool >.

Definition at line 859 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::insert ( unsigned  i,
const Chromosome &  chrom 
) [inline]

Definition at line 288 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::insert ( unsigned  i,
const T &  allele 
) [inline]

Definition at line 277 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::append(), ChromosomeT_base< bool >::insert(), and ChromosomeT_base< bool >::resize().

template<class T>
void ChromosomeT_base< T >::invert ( unsigned  granularity = 1  )  [inline]

Definition at line 190 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::invert ( unsigned  start,
unsigned  stop,
unsigned  granularity = 1 
) [inline, virtual]

Implements Chromosome.

Definition at line 161 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::invert().

template<class T>
Chromosome& ChromosomeT_base< T >::operator= ( const T &  c  )  [inline]

Definition at line 115 of file ChromosomeT.h.

template<class T>
Chromosome& ChromosomeT_base< T >::operator= ( const ChromosomeT_base< T > &  c  )  [inline, virtual]

Implements Chromosome.

Definition at line 109 of file ChromosomeT.h.

template<class T>
Chromosome& ChromosomeT_base< T >::operator= ( const std::vector< T > &  c  )  [inline]

Definition at line 100 of file ChromosomeT.h.

template<class T>
Chromosome& ChromosomeT_base< T >::operator= ( const Chromosome &  c  )  [inline]

Definition at line 94 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::readFrom ( std::istream &  is  )  [inline, virtual]

Implements Chromosome.

Reimplemented in ChromosomeT< T >, ChromosomeT< double >, ChromosomeT< char >, ChromosomeT< int >, and ChromosomeT< bool >.

Definition at line 823 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::recombineDiscrete ( Chromosome &  mate  )  [inline]

Definition at line 791 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::recombineDiscrete ( const Chromosome &  dad,
const Chromosome &  mom 
) [inline]

Definition at line 780 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::remove ( unsigned  i,
unsigned  k 
) [inline, virtual]

Implements Chromosome.

Definition at line 332 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::remove ( unsigned  i  )  [inline, virtual]

Implements Chromosome.

Definition at line 321 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::replace ( unsigned  i,
const Chromosome &  chrom 
) [inline]

Definition at line 265 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::replace ( unsigned  i,
const T &  v 
) [inline]

Definition at line 254 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::resize ( unsigned  n  )  [inline, virtual]

Implements Chromosome.

Definition at line 125 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::crossover(), ChromosomeT_base< bool >::crossoverUniform(), ChromosomeT< double >::decodeBinary(), ChromosomeT< bool >::encode(), ChromosomeT< bool >::encodeBinary(), CMSA::init(), CMA::init(), ChromosomeT_num< char >::initialize(), ChromosomeT< bool >::readFrom(), ChromosomeT< int >::readFrom(), ChromosomeT< char >::readFrom(), ChromosomeT< double >::readFrom(), ChromosomeT_base< bool >::readFrom(), ChromosomeT< double >::recombineGenIntermediate(), ChromosomeT< double >::recombineGeomIntermediate(), ChromosomeT< double >::recombineIntermediate(), and ChromosomeT_base< bool >::transcribe().

template<class T>
void ChromosomeT_base< T >::rotateLeft ( unsigned  n = 1  )  [inline, virtual]

Implements Chromosome.

Definition at line 370 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::rotateRight ( unsigned  n = 1  )  [inline, virtual]

Implements Chromosome.

Definition at line 350 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::shuffle (  )  [inline, virtual]

Implements Chromosome.

Definition at line 243 of file ChromosomeT.h.

template<class T>
unsigned ChromosomeT_base< T >::size (  )  const [inline, virtual]

Implements Chromosome.

Definition at line 89 of file ChromosomeT.h.

Referenced by ChromosomeT< double >::accumulate(), ChromosomeT_base< bool >::crossover(), ChromosomeT_base< bool >::crossoverUniform(), ChromosomeT_num< char >::cutOff(), ChromosomeT< bool >::decode(), ChromosomeT< double >::decodeBinary(), ChromosomeT_base< bool >::duplicate(), ChromosomeT< bool >::flip(), ChromosomeT< bool >::initialize(), ChromosomeT_num< char >::initialize(), ChromosomeT_base< bool >::insert(), ChromosomeT_base< bool >::invert(), ChromosomeT< double >::mutateCauchy(), ChromosomeT< int >::mutateDiffGeom(), ChromosomeT< double >::mutateLogNormal(), ChromosomeT< double >::mutateNormal(), ChromosomeT< double >::mutateNormalRotAngles(), ChromosomeT_num< char >::mutateUniform(), ChromosomeT_base< bool >::operator=(), ChromosomeT< bool >::pvm_pkchrom(), ChromosomeT< int >::pvm_pkchrom(), ChromosomeT< char >::pvm_pkchrom(), ChromosomeT< double >::pvm_pkchrom(), ChromosomeT< bool >::pvm_upkchrom(), ChromosomeT< int >::pvm_upkchrom(), ChromosomeT< char >::pvm_upkchrom(), ChromosomeT< double >::pvm_upkchrom(), ChromosomeT< bool >::readFrom(), ChromosomeT< int >::readFrom(), ChromosomeT< char >::readFrom(), ChromosomeT< double >::readFrom(), ChromosomeT< T >::readFrom(), ChromosomeT_base< bool >::readFrom(), ChromosomeT< double >::recombineGenIntermediate(), ChromosomeT< double >::recombineGeomIntermediate(), ChromosomeT< double >::recombineIntermediate(), ChromosomeT_base< bool >::remove(), ChromosomeT_base< bool >::replace(), ChromosomeT_base< bool >::resize(), ChromosomeT_base< bool >::rotateLeft(), ChromosomeT_base< bool >::rotateRight(), ChromosomeT< double >::SBX(), ChromosomeT_base< bool >::shuffle(), ChromosomeT< double >::simpleMutatePolynomial(), ChromosomeT_base< bool >::size(), ChromosomeT_base< bool >::swap(), ChromosomeT< bool >::writeTo(), ChromosomeT< int >::writeTo(), ChromosomeT< char >::writeTo(), ChromosomeT< double >::writeTo(), ChromosomeT< T >::writeTo(), and ChromosomeT_base< bool >::writeTo().

template<class T>
unsigned ChromosomeT_base< T >::sizeOfAlleles (  )  const [inline, virtual]

Implements Chromosome.

Definition at line 84 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::swap ( unsigned  i,
unsigned  j 
) [inline, virtual]

Implements Chromosome.

Definition at line 222 of file ChromosomeT.h.

Referenced by ChromosomeT_base< bool >::crossover(), ChromosomeT_base< bool >::crossoverUniform(), ChromosomeT_base< bool >::invert(), ChromosomeT_base< bool >::shuffle(), and ChromosomeT_base< bool >::swap().

template<class T>
void ChromosomeT_base< T >::transcribe ( unsigned  start,
unsigned  stop,
const Chromosome &  chrom 
) [inline]

Definition at line 200 of file ChromosomeT.h.

template<class T>
const char* ChromosomeT_base< T >::typeOfAlleles (  )  const [inline, virtual]

Implements Chromosome.

Definition at line 80 of file ChromosomeT.h.

template<class T>
void ChromosomeT_base< T >::writeTo ( std::ostream &  os  )  const [inline, virtual]

Implements Chromosome.

Reimplemented in ChromosomeT< T >, ChromosomeT< double >, ChromosomeT< char >, ChromosomeT< int >, and ChromosomeT< bool >.

Definition at line 801 of file ChromosomeT.h.

The documentation for this class was generated from the following file: